BALL 1.5.0
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BALL::CommandlineParser Member List

This is the complete list of members for BALL::CommandlineParser, including all inherited members.

CommandlineParser(String tool_name, String tool_description, String tool_version, String build_date, String category="")BALL::CommandlineParser
copyAdvancedParametersToOptions(Options &options)BALL::CommandlineParser
EMTPY_LISTBALL::CommandlineParserstatic
get(String name)BALL::CommandlineParser
getList(String name)BALL::CommandlineParser
getStartCommand()BALL::CommandlineParser
getStartTime()BALL::CommandlineParser
has(String name)BALL::CommandlineParser
NOT_FOUNDBALL::CommandlineParserstatic
parse(int argc, char *argv[])BALL::CommandlineParser
printHelp(const std::set< String > &parameter_names=std::set< String >(), bool show_manual=true)BALL::CommandlineParser
printToolInfo()BALL::CommandlineParser
registerAdvancedParameters(Options &options)BALL::CommandlineParser
registerFlag(String name, String description, bool default_gui_value=false, bool hidden=false)BALL::CommandlineParser
registerMandatoryDoubleListParameter(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryDoubleParameter(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryGalaxyOutputFolder(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryGalaxyOutputId(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryInputFile(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryInputFileList(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryIntegerListParameter(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryIntegerParameter(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryOutputFile(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryOutputFileList(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryStringListParameter(const String &name, const String &description)BALL::CommandlineParser
registerMandatoryStringParameter(const String &name, const String &description)BALL::CommandlineParser
registerOptionalDoubleListParameter(const String &name, const String &description, const std::vector< double > &default_values=vector< double >())BALL::CommandlineParser
registerOptionalDoubleParameter(const String &name, const String &description, double default_value=0.0)BALL::CommandlineParser
registerOptionalGalaxyOutputFolder(const String &name, const String &description, const String &default_value="")BALL::CommandlineParser
registerOptionalGalaxyOutputId(const String &name, const String &description, const String &default_value="")BALL::CommandlineParser
registerOptionalInputFile(const String &name, const String &description, const String &default_value="")BALL::CommandlineParser
registerOptionalInputFileList(const String &name, const String &description, const std::vector< String > &default_values=vector< String >())BALL::CommandlineParser
registerOptionalIntegerListParameter(const String &name, const String &description, const std::vector< int > &default_values=vector< int >())BALL::CommandlineParser
registerOptionalIntegerParameter(const String &name, const String &description, int default_value=0)BALL::CommandlineParser
registerOptionalOutputFile(const String &name, const String &description, const String &default_value="")BALL::CommandlineParser
registerOptionalOutputFileList(const String &name, const String &description, const std::vector< String > &default_values=vector< String >())BALL::CommandlineParser
registerOptionalStringListParameter(const String &name, const String &description, const std::vector< String > &default_values=vector< String >())BALL::CommandlineParser
registerOptionalStringParameter(const String &name, const String &description, const String &default_value="")BALL::CommandlineParser
setParameterAsAdvanced(String name)BALL::CommandlineParser
setParameterAsHidden(String name)BALL::CommandlineParser
setParameterRestrictions(String category, String par_name, double min_value, double max_value)BALL::CommandlineParser
setParameterRestrictions(String par_name, double min_value, double max_value)BALL::CommandlineParser
setParameterRestrictions(String category, String par_name, int min_value, int max_value)BALL::CommandlineParser
setParameterRestrictions(String par_name, int min_value, int max_value)BALL::CommandlineParser
setParameterRestrictions(String category, String par_name, list< String > &allowed_values)BALL::CommandlineParser
setParameterRestrictions(String par_name, list< String > &allowed_values)BALL::CommandlineParser
setSupportedFormats(String category, String par_name, String supported_formats)BALL::CommandlineParser
setSupportedFormats(String par_name, String supported_formats)BALL::CommandlineParser
setToolManual(const String &manual)BALL::CommandlineParser