java.lang.Object
ij.plugin.HyperStackConverter
- All Implemented Interfaces:
PlugIn
Implements the "Stack to HyperStack", "RGB to HyperStack"
and "HyperStack to Stack" commands.
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Field Summary
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionvoid
This method is called when the plugin is loaded.void
Changes the dimension order of a 4D or 5D stack from the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to the XYCZT order used by ImageJ.static ImagePlus
toHyperStack
(ImagePlus imp, int c, int z, int t) Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and display mode ("Composite").static ImagePlus
toHyperStack
(ImagePlus imp, int c, int z, int t, String mode) Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and the specified display mode ("composite", "color" or "grayscale").static ImagePlus
toHyperStack
(ImagePlus imp, int c, int z, int t, String order, String mode) Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames.static void
Converts the specified hyperstack into a stack.
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Field Details
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CZT
public static final int CZT- See Also:
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CTZ
public static final int CTZ- See Also:
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ZCT
public static final int ZCT- See Also:
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ZTC
public static final int ZTC- See Also:
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TCZ
public static final int TCZ- See Also:
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TZC
public static final int TZC- See Also:
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Constructor Details
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HyperStackConverter
public HyperStackConverter()
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Method Details
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run
Description copied from interface:PlugIn
This method is called when the plugin is loaded. 'arg', which may be blank, is the argument specified for this plugin in IJ_Props.txt. -
toHyperStack
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and display mode ("Composite"). -
toHyperStack
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames using the default ordering ("xyczt") and the specified display mode ("composite", "color" or "grayscale"). -
toHyperStack
Converts the specified stack into a hyperstack with 'c' channels, 'z' slices and 't' frames. The default "xyczt" order is used if 'order' is null. The default "composite" display mode is used if 'mode' is null.- Parameters:
imp
- the stack to be convertedc
- channelsz
- slicest
- framesorder
- hyperstack order ("default", "xyctz", "xyzct", "xyztc", "xytcz" or "xytzc")mode
- display mode ("composite", "color" or "grayscale")- Returns:
- the resulting hyperstack
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toStack
Converts the specified hyperstack into a stack. -
shuffle
Changes the dimension order of a 4D or 5D stack from the specified order (CTZ, ZCT, ZTC, TCZ or TZC) to the XYCZT order used by ImageJ.
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