Class CalculateSplitRates

java.lang.Object
jebl.evolution.trees.CalculateSplitRates

public class CalculateSplitRates extends Object
Created by IntelliJ IDEA. User: msuchard Date: Dec 18, 2006 Time: 1:13:51 PM To change this template use File | Settings | File Templates.
  • Field Details

  • Constructor Details

    • CalculateSplitRates

      public CalculateSplitRates(NexusImporter importer)
  • Method Details

    • loadTrees

      public void loadTrees(int maxTrees, int burnIn) throws IOException, ImportException
      Throws:
      IOException
      ImportException
    • displayStatistics

      public void displayStatistics()
    • addTreeToDensityMap

      public void addTreeToDensityMap(jebl.evolution.trees.CalculateSplitRates.DensityMap densityMap, RootedTree tree)
    • displayIntervals

      public void displayIntervals()
    • findTimeIntervals

      public void findTimeIntervals()
    • main

      public static void main(String[] args)
      Parameters:
      args - args[0] = Beast tree log, args[1] = max number of trees to read args[2] = number of burnin trees to discard args[3] = proportion file name, args[4] = density map filename